DeepRFC
=======

.. automodule:: DeepRFC
    :members: 
    :undoc-members: 
    :show-inheritance: 
    
    **DeepRFC running procedure**
    
    
    -------------------------
   
    **Note**: This source code was developed in Linux, and has been tested in Ubuntu 16.04 with Python 3.6. Anaconda was used as a package manager
    
    
    1. Clone the repository
    
    .. code-block::
    
            $ git clone https://bitbucket.org/kaistsystemsbiology/deeprfc.git


    2. Create and activate a conda environment
    
    .. code-block::

            $ conda env create -f environment.yml
            $ conda activate deeprfc

    3. If pip error occurs due to Pytorch version,  
      Remove followings from *environment.yml*

      .. code-block::
      
            Torch==1.2.0+cu92
            Torchvision==0.4.0+cu02

      -Install an appropriate version of Pytorch, according to your computing envrionment.  
        Please refer to https://pytorch.org/get-started/locally/


    *Example*

    - Run DeepRFC

    .. code-block::
    
            $ python deeprfc.py -i ./example/test.txt -o ./output 



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